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Genome Databases

Science > Biology > Bioinformatics > Online Services > Genome Databases

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Dictyostelium discoideum genome annotation and analysis - http://dictyworkbench.sdsc.edu
Genome annotation and analysis portal for the slime mold Dictyostelium discoideum.

Entrez Genome Database - http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Genome
A tool for scientists and researchers. Provides views for a variety of genomes, complete chromosomes, sequence maps with contigs, and integrated genetic and physical maps.

EURExpress II - http://www.eurexpress.org/
A transcriptome-wide atlas database for the developing mouse embryo established by RNA in situ hybridization.

GenomeSeek - http://genamics.com/genomes/
A fully-searchable database to provide information and easy access to over 200 current and completed genome projects.

Gramene: A comparative genomic resource for grains - http://www.gramene.org
Gramene is a curated, open-source data resource that provides agricultural researchers and plant breeders with biological and genomic information on rice and other grasses.

HCNetDat - http://www.stjuderesearch.org/hcnetdat/
DNA microarray gene annotation database.

http://crfb.univ-mrs.fr/aniseed/ - http://crfb.univ-mrs.fr/aniseed/
The Ascidian Network for in Situ Experiment and Embryological Data is a generic system designed to offer a representation of ascidian embryonic development at the level of the genome, of the cell or of the whole embryo.

http://www.flymine.org - http://www.flymine.org
An integrated database of genomic, expression and protein data for Drosophila and Anopheles.

Human Ageing Genomic Resources - http://genomics.senescence.info/
A collection of databases and tools designed to help researchers understand the genetics of human ageing.

Human Genome Sequencing Center - http://www.hgsc.bcm.tmc.edu/
Provides direct access to the data computed on several organisms such as Rat, Mouse, Drosophila, and Bovine as it relates to human genome sequencing.

Maize Genome Assembly Project - http://www.plantgenomics.iastate.edu/maize/
Iowa State University provides an assembly of the maize genome for download and tools for searching and viewing the assembly online.

MaizeGDB - http://www.maizegdb.org/
MaizeGDB is the community database for biological information about the crop plant Zea mays.

Mouse Genome Informatics - http://www.informatics.jax.org/
This site contains information on mouse genetic markers, mapping, phenotypes, mammalian homology and gene expression. All data are searchable through a set of Query Forms.

PhenomicDB - http://www.phenomicdb.de
PhenomicDB is a multi-organism phenotype/genotype database. Users can compare the phenotypes of a gene over many organisms simultaneously.

Rat Genome Database - http://rgd.mcw.edu
Contains rat genomic data such as genes, SSLPs, ESTs, QTLs, and strain information and tools such as vcmap, genome scanner, rhmap server, metagene. Also has a rat research community forum.

Saccharomyces Genome Database - http://www.yeastgenome.org/
Resource for genomic information on yeast, with tutorial on gene ontology, homology searches and comparisons. Includes links to tools, related conferences, and staff at Stanford University School of Medicine, California.

Saccharopolyspora erythraea genome - http://131.111.43.95/
Website for S. erythraea NRRL23338 genome sequencing project.

SOL Genomics Network - http://sgn.cornell.edu
Integrated clade oriented genome database for the Solanaceae (tomato, potato, pepper, eggplant etc.) and other Asterids. Contains genetic maps, gene sequences, phenotypic descriptions and images, tomato genome sequence and gene annotations.

X:Map Genome Browser - http://xmap.picr.man.ac.uk
An interactive genome browser supporting multiple species. X:Map displays mapping between Affymetrix Exon Arrays and their corresponding genes and exons.

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