Google Directory - Science > Biology > Genetics > Software

Directory Help
Search only in Quantitative GeneticsSearch the Web

Quantitative Genetics

Science > Biology > Genetics > Software > Quantitative Genetics

Web Pages

Viewing in Google PageRank order View in alphabetical order

	Animal Breeding & Genetics, Wageningen - http://www.zod.wau.nl/abg/hs/links/software.html Provides programmes in the area of animal breeding including SIP (Selection Index Program), MAGGIC (Gibbs Sampling) and GENEFLOW. Free software for WIN.
	Statistical Genetics Software - http://www.biomath.medsch.ucla.edu/faculty/klange/software.html Collection of primarily Fortan 77 programs for genetic analysis. Requires registration to download. Site not updated since 1999.
	The Rosetta Syllego System - http://www.rosettabio.com/products/syllego/default.htm The system is a resource for managing genetic variation information and integrating relevant study data from various sources so that scientists and researchers can better plan and execute genetic studies.
	Progeny Software - http://www.progenygenetics.com Supply pedigree drawing and genetic data management software for genetic research with a built-in customizable relational database.
	Quantitative Genetics Resources - http://nitro.biosci.arizona.edu/zbook/book.html List of resources with links to programs and notes on a range of subjects including animal and plant breeding, and evolutionary and human genetics.

	PowerMarker - http://statgen.ncsu.edu/powermarker/ Set of statistical methods for discrete genetic data analysis, designed especially for microsatellite data analysis. Includes downloadable versions for Windows.
	Genetic Analysis Software Database - http://www.nslij-genetics.org/soft/ Extensive, regularly-updated directory of linkage, mapping, and pedigree statistics software with links to obtain freely available copies.
	R/qtl: A QTL Mapping Environment - http://www.rqtl.org Program for mapping quantitative trait loci in experimental crosses. Includes sample graphics and tutorial in pdf format.
	http://www.hgu.mrc.ac.uk/Softdata/Lams/ - http://www.hgu.mrc.ac.uk/Softdata/Lams/ Freeware record keeping system designed for a breeding colony of transgenic mice. Includes program description, system requirements, and installation instructions.
	Agriculture Business Research Institute - http://abri.une.edu.au ABRI provides recording systems for all species of commercial livestock. Software offered include Dairy Express, Saltbush and Breedplan.

	http://cc.oulu.fi/~jaspi/popgen/popgen.htm - http://cc.oulu.fi/~jaspi/popgen/popgen.htm Software that models population genetics with emphasis on genetic drift, selection, and migration. Windows 95.
	GeneFlow Inc - http://www.geneflowinc.com/ This Virginia, USA company provides software (GeneFlow, SynerGene, QTLlocate) and services oriented towards plant breeding. Website does not give prices or operating systems supported.
	Finnish Forest Genetics and Tree Breeding - http://www.metla.fi/info/vlib/forestgen/software.htm Links to population and quantitative genetic software of interest in tree improvement, but also useful in other species.
	The CompuPed 4.0 Pedigree Program - http://www.mbfs.com/compuped/ Extended and reverse pedigrees, inbreeding coefficients and genetic inheritance capabilities for Win and Mac. Download a demo or order online.
	Locus Technology, Inc - http://www.locustechnology.com/ Colony management, supports creation and tracking of research animals and for transgenic and congenic lines, knockouts and outbred strains.

	Big Bench Software - http://www.bigbenchsoftware.com/ Commercial software for the management of transgenic mouse colonies. Windows and Mac OS X. Demo version available.
	CircuSoft Instrumentation LLC - http://www.circusoft.com/content/product/1/ Transgenic mouse colony tracking and management software for the Mac and Windows. Includes demo software and manuals.
	Laboratory of Plant Breeding, Wageningen - http://www.pbr.wur.nl/UK/Resources/ Offers free downloadable genetics and plant breeding related software.
	http://agbu.une.edu.au/~kmeyer/dfreml.html - http://agbu.une.edu.au/~kmeyer/dfreml.html Meyer's variance component estimation software for animal breeding is free for research purposes, available for UNIX, DOS and FORTRAN source code.
	http://www-personal.une.edu.au/~bkinghor/genup.htm - http://www-personal.une.edu.au/~bkinghor/genup.htm Free software to assist learning quantitative genetic concepts (animal breeding) for WIN.

	Ignacy Misztal - http://nce.ads.uga.edu/~ignacy/programs.html Animal breeding oriented programs for sparse matrix multiple trait REML and BLUP. Fortran source is free for research use.
	Pedigree Viewer - http://www-personal.une.edu.au/~bkinghor/pedigree.htm Unique display and examination tool for large pedigrees, with inbreeding and genetic merit data also. Free WIN program.
	http://www-personal.une.edu.au/~bkinghor/desire.htm - http://www-personal.une.edu.au/~bkinghor/desire.htm Explore possible selection outcomes when goals (desired gains) are set for traits. This free WIN program is also contained in GENUP.
	http://www.bio.unc.edu/faculty/vision/lab/mappop/ - http://www.bio.unc.edu/faculty/vision/lab/mappop/ Software for selective mapping and bin mapping. Windows version, documentation and references are available for download.
	ASReml Cookbook - http://uncronopio.org/ASReml Statistical software designed for fitting mixed models for large datasets. Contains commented code for univariate and multivariate analysis including longitudinal and spatial analysis.

	Taxonomy 3 - http://taxonomy.delrieu.org A package of SAS macros for target discovery, detection of subphenotype and genetic heterogeneity. Can use an unlimited numbers of markers in a single multivariate analysis.
	http://vce.tzv.fal.de/ - http://vce.tzv.fal.de/ Groeneveld's Variance Component Estimation software was developed for animal breeding problems. WIN and UNIX versions are free for research use. PEST documentation is also available here.
	http://nitro.biosci.arizona.edu/zbook/general/gened.html - http://nitro.biosci.arizona.edu/zbook/general/gened.html Graphically represents the effect of genetic drift on gene frequency of one or more populations for a single locus, two allele model in a closed population using stochastic simulation methods. The DOS program is free.
	GeneticStudio - http://dyerlab.bio.vcu.edu/trac/GeneticStudio Software platform targeting the analysis of population genetic data. Provides some brief videos to demonstrate the application.
	Mosaic Vivarium - http://www.mosaicvivarium.com Web-based software solution for breeding colony management. The software is well-suited to management of transgenic and genetically-modified mouse breeding colonies.

Help build the largest human-edited directory on the web.