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Broad Institute Genetics Software - http://www.broad.mit.edu/tools/software.html
Offers a wide range of software for genome sequence analysis, genetic variation, linkage analysis, expression analysis, and PCR primer selection. |
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Genetic Linkage Analysis - http://linkage.rockefeller.edu/
Offers links and other resources for genetic analysis software from the Rockefeller University. |
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The Sequence Manipulation Suite - http://bioinformatics.org/sms2/
The Sequence Manipulation Suite is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. It is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing. |
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CREME: Cis-REgulatory Module Explorer - http://creme.dcode.org/
Identifies modules of putative transcription factor binding sites that are specific to promoters of co-expressed human genes. Provides a resource for decoding microarray experiments. |
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MuStaR Sequence Variant Database Software - http://www.hgu.mrc.ac.uk/Softdata/Mustar/
Designed to create a database of mutation loci, to make this information available to as many people as possible. No longer being maintained. |
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Progeny Software - http://www.progenygenetics.com
Supply pedigree drawing and genetic data management software for genetic research with a built-in customizable relational database. |
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GENtle - http://gentle.magnusmanske.de/
GPL software for viewing and editing DNA and amino acid sequences. Integrated alignment, PCR, BLAST searches, and shared databases. Windows version is available for download (English and German). |
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Gene Array Analyzer Software - http://www.medinfopoli.polimi.it/GAAS/
Software for the efficient management, analysis and visualization of large amounts of gene expression data. |
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Mutation Explorer - http://www.softgenetics.com/mutationExplorer.html
Software to automatically detect mutations from DNA sequence data, including homozygous, heterozygous, insertion and deletion. |
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PeakTrace Basecaller - https://www.nucleics.com/peaktrace/
Software for base and quality scoring ABI DNA sequencing traces. Works with all ABI DNA sequencers including the ABI 377, ABI 310, ABI 3700, ABI 3100, ABI 3130 and ABI 3730. |
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Free FASTA/MultiFASTA converter tool - http://www.dnabaser.com/download/FASTA-Converter/index.html
This tool will look for all FASTA files in the specified folder and will merge their content in a single file, generating a standard or custom MultiFASTA file. Just download the program and double click to run it. It does not need additional software/add-ons/Java or VBRun packages to run. |
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Pegasys - http://www.bioinformatics.ubc.ca/pegasys/
Open source software for executing and integrating analyses of biological sequences. Includes documentation and installation instructions. |
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Genex Open Source Gene Expression Database - http://genex.sourceforge.net/
Genex is an open source database for storing, processing, and analyzing gene expression microarray data.It is intended for local installation by medium sized laboratories with some system administration support. No activity since 2003. |
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CounterTrace II DNA Sequencing - http://www.nucleics.com/DNA_sequencing_tools/DNA-sequencing-software-countertrace.html
Software and reagent for improving the quality and read length of DNA sequence traces collected on the ABI 3730 DNA sequencer. |
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Genetic Network Maps as Java Applets - http://www.bio.davidson.edu/courses/genomics/mirror/Urchin/u0maps.htm
Genetic networks controlling development in Sea Urchin represented as Java applets. Formal scheme. Molecular interactions modelled as Petri Net. |
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Alternative Splice Site Predictor - http://es.embnet.org/~mwang/assp.html
ASSP predicts putative alternative exon isoform, cryptic, and constitutive splice sites of internal (coding) exons. |
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Synopsis - http://www.ananomouse.com/products/synopsis.asp
Commercial Windows software for visualization and annotation of genomic data. |
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PyMoods - http://allometra.com/
A software application for visualizing genomic data. Can be used to analyze and display relations between complete genomes, genomic fragments, proteins, ESTs, full length cDNAs, and gene expression data. |
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BioConstructor Molecular Cloning Software - http://www.bioconstructor.com
BioConstructor is a bioinformatics solution focussing on molecular cloning. Runs on Windows, Mac OS X, Linux. |
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MapMakerDrawer - http://www.emboss.co.nz/products.php?pid=2
Program that draws chromosome maps (as EMF files) using the output of MapMaker EXP. Delphi source code is freely available upon request. The software is available under the MIT licence. |
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Alice Software - http://www.alicesoftware.com/
Database system to build and publish synonymised checklists of species. Species descriptions include pre-established fields and detailed descriptions employing any number of user-defined fields. |
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Hands on Genetics - http://www.handsongenetics.com
Instructional software for basic genetics, such as DNA, PCR, Mendel, Hardy-Weinberg, meiosis and computer simulations. Freeware for Mac and Windows. |
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Seqool - http://www.biossc.de/seqool/index.html
Free Windows software tool for the analysis of DNA and RNA sequences. It includes several sequence statistics and a comprehensive set of signal search methods. |
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GeneSifter - http://www.genesifter.net/web/
Web-based microarray analysis system that combines data management and analytical functions with integrated, current gene annotation from public databases. Product overview in pdf format. |