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  Science > Biology > Biochemistry and Molecular Biology > Methods and Techniques > PCR > Software   Go to Directory Home  

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  Premierbiosoft http://www.premierbiosoft.com/qpcr/index.html
Computer program used to screen SYBR Green primers and TaqMan probes for secondary structures such as dimers or hairpins.
  PCR Box Titration Calculator http://www.attotron.com/pub/pcrtitr.htm
JavaScript program calculates the amounts of ingredients needed to do two-dimensional box titrations of various reactants in polmerase chain reactions.
  TGGE-STAR http://www.charite.de/bioinf/tgge/
A program to optimize temperature gradient gel electrophoresis and PCR for mutation screening, From the Institute for Medical Genetics, Charite, Berlin, Germany.
  Software for Amplified Fragment Length http://www.softgenetics.com/papers/AFLP%20Application%20Note.pdf
Article by Maurisa Riley and ChangSheng Jonathan Liu at SoftGenetics, LLC, State College, PA, USA.
  In silico PCR http://insilico.ehu.es/PCR/
Tools to derive the theoretical results from many PCR techniques and techniques related to PCR, from the Department of Immunology, Microbiology and Parasitology, Faculty of Pharmacy at the University of the Basque Country, Spain.
  AutoPrime http://www.autoprime.de
Automates generation of primers for RT-PCR experiments by combining the information from sequence databases with primer design software.
  http://www.biocenter.helsinki.fi/bi/Programs/fastpcr.htm http://www.biocenter.helsinki.fi/bi/Programs/fastpcr.htm
Free software for design of PCR primers, multiplex PCR, in silico PCR, clustering and any kind of repeat sequence.
  Comet Assay http://www.perceptive.co.uk/applications/comet.htm
An advanced image analysis system for the quantification of DNA damage in cells using the Comet single cell gel electrophoresis technique, from Perceptive Instruments Ltd., Haverhill, Suffolk, UK.

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