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  Science > Biology > Biochemistry and Molecular Biology > Gene Expression > Software   Go to Directory Home  

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Databases and Maps (4)
DNA Structural Software (6)
Online Services (9)
Related Categories:
    Science > Biology > Biochemistry and Molecular Biology > Methods and Techniques > Arrays > Software  (1)
    Science > Biology > Biochemistry and Molecular Biology > Software  (21)
    Science > Biology > Genetics > Software  (58)

Web Pages
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  DNAStar http://www.dnastar.com/
Develops sequence analysis software for molecular biology.
  Oligo Software http://www.oligo.net/
Consensus, multiplex and degenerate primers, oligonucleotide database, secondary structure and difficult sequencing for researchers in PCR and related technologies. Developed since 1989, by Molecular Biology Insights Inc.
  Nucleic Acid and Protein Sequence Analysis Software http://www.psc.edu/general/software/categories/sequence_analysis.html
From the Pittsburgh Superconputing Center, Carnegie Mellon University, Pittsburgh, USA.
  Strand Life Sciences Pvt. Ltd. http://www.strandls.com/
Develops data analysis and visualization software for microarray gene expression data from its base in Bangalore, India.
  Integrated Genomics Inc. http://www.integratedgenomics.com/
Software and services for life science, particularly for microbial genomics, in Chicago, Illinois.
  Premier Biosoft International http://www.premierbiosoft.com/
Developers of software for real time PCR primer design, TaqMan, molecular beacons, DNA microarray analysis, drawing restriction plasmid maps, gateway cloning experiments, protein interaction network and functional genomics.
  Delila http://www.lecb.ncifcrf.gov/~toms/delila.html
Software for Analysis of Protein and Nucleic-acid Sequences.
  DNA Software http://www.dnasoftware.com/
Company selling software intended for molecular biology.
  Chang Bioscience http://www.changbioscience.com/
Microarray analysis, lab inventory, and primer sequence database tools from San Francisco, California.
  Redasoft Corp. http://www.redasoft.com/
Makers of restriction enzyme database program, to design cloning experiments and produce high resolution graphics of plasmid maps and alignments. Includes corporate details of company in Bradford, Ontario.
  RNAdraw http://www.rnadraw.com
A program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows.
  AiO http://132.187.163.191/aio/
Downloadable package integrating database, oligo ordering, DNA and protein analysis programs from Wuerzburg, Germany.
  Improved Outcomes Software Inc. http://www.improvedoutcomes.com/
Offers programs and custom development for the visualization, analysis and classification of gene expression and proteomics data, image-guided surgery and information technology. Based in Inverary, Ontario.
  List of Lists Annotated http://lola.gwu.edu/
LOLA is a platform for uploading and comparing microarray generated gene lists, with curated, annotated and published data linked to citations, in an interface maintained by the Genomics Core Facility, George Washington University.
  MB DNA Analysis http://www.molbiosoft.de/
Program for statistical analysis and evaluation of the biological significance from microarray data. Includes key features, registration and download for Windows and Linux.
  MILANO - Microarray Literature-based Annotation http://milano.md.huji.ac.il/
A web-based tool to annotate lists of genes derived from microarray experiments. The annotations are generated by searching literature databases (Medline, GeneRIF) for the gene's synonyms co-occurrences with user-provided terms.
  The Ribosome Builder Project http://rbuilder.sourceforge.net
A software project to simulate the ribosome.
  Koada Technology http://www.koada.com
Supplies software for automated analysis and quantification of microarray images.
  Score Comets http://www.scorecomets.com/
Site introducing the comet assay, including equipment needed, hints and tips along with information on the Comet Assay IV software scoring system.
  Qlucore http://www.qlucore.com
Supplies software to explore and analyze microarray gene expression data sets, in Lund, Sweden.
  Listing of DNA software links http://www.mpiz-koeln.mpg.de/~weisshaa/Adis/DNA-software-links.html
Katalog of links to sources of software for molecular biology.
  BioMath Solutions, LLC http://www.biomathsolutions.com
A consulting company specializing in data analysis of high throughput molecular technologies, experimental design, biomarker prediction, and software and product development.
  Gentellect http://www.gentellect.com
The "Gene Expression Analysis System" searches several gene expression databases and shows the results in several graphic formats.
  Short Time-series Expression Miner http://www.cs.cmu.edu/~jernst/stem/
Freeware for clustering, comparing, and visualizing short time series gene expression data, maintained at Carnegie Mellon University, Pittsburgh.
  Gene Kinetics http://www.scienceandresearchdevelopmentinstitute.com/genkia.html
Software for transcription and cell cycle genes, providing peak intervals, max values as a function of decay of gene-activating principle, inhibitory mRNA, gene amplification, anabolic capacity and proteolysis.

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