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Science > Biology > Biochemistry and Molecular Biology > Gene Expression > Software

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	Integrated Genomics Inc. - http://www.integratedgenomics.com/ Software and services for life science, particularly for microbial genomics, in Chicago, Illinois.
	Premier Biosoft International - http://www.premierbiosoft.com/ Developers of software for real time PCR primer design, TaqMan, molecular beacons, DNA microarray analysis, drawing restriction plasmid maps, gateway cloning experiments, protein interaction network and functional genomics.
	http://www.dnastar.com/ - http://www.dnastar.com/ Develops sequence analysis software for molecular biology.
	Oligo Software - http://www.oligo.net/ Consensus, multiplex and degenerate primers, oligonucleotide database, secondary structure and difficult sequencing for researchers in PCR and related technologies. Developed since 1989, by Molecular Biology Insights Inc.
	Strand Life Sciences Pvt. Ltd. - http://www.strandls.com/ Develops data analysis and visualization software for microarray gene expression data from its base in Bangalore, India.

	Chang Bioscience - http://www.changbioscience.com/ Microarray analysis, lab inventory, and primer sequence database tools from San Francisco, California.
	http://www.qlucore.com - http://www.qlucore.com Supplies software to explore and analyze microarray gene expression data sets, in Lund, Sweden.
	Short Time-series Expression Miner - http://www.cs.cmu.edu/~jernst/stem/ Freeware for clustering, comparing, and visualizing short time series gene expression data, maintained at Carnegie Mellon University, Pittsburgh.
	http://www.lecb.ncifcrf.gov/~toms/delila.html - http://www.lecb.ncifcrf.gov/~toms/delila.html Software for Analysis of Protein and Nucleic-acid Sequences.
	DNA Software - http://www.dnasoftware.com/ Company selling software intended for molecular biology.

	Redasoft Corp. - http://www.redasoft.com/ Makers of restriction enzyme database program, to design cloning experiments and produce high resolution graphics of plasmid maps and alignments. Includes corporate details of company in Bradford, Ontario.
	Nucleic Acid and Protein Sequence Analysis Software - http://www.psc.edu/general/software/categories/sequence_analysis.html From the Pittsburgh Superconputing Center, Carnegie Mellon University, Pittsburgh, USA.
	PGEToolbox: A Matlab Toolbox for Population Genetics and Evolution - http://bioinformatics.org/pgetoolbox/ PGEToolbox enables population genetists to manipulate DNA polymorphism sequences and SNPs, compute basic statistics of sequence variation, and carry out neutrality tests.
	MB DNA Analysis - http://www.molbiosoft.de/ Program for statistical analysis and evaluation of the biological significance from microarray data. Includes key features, registration and download for Windows and Linux.
	Improved Outcomes Software Inc. - http://www.improvedoutcomes.com/ Offers programs and custom development for the visualization, analysis and classification of gene expression and proteomics data, image-guided surgery and information technology. Based in Inverary, Ontario.

	http://www.fast-db.com/ - http://www.fast-db.com/ Alternative splicing and transcripts database that gathers several bioinformatic tools aiming to study expression of the human gene products.
	Score Comets - http://www.scorecomets.com/ Site introducing the comet assay, including equipment needed, hints and tips along with information on the Comet Assay IV software scoring system.
	Koada Technology - http://www.koada.com Supplies software for automated analysis and quantification of microarray images.
	MILANO - Microarray Literature-based Annotation - http://milano.md.huji.ac.il/ A web-based tool to annotate lists of genes derived from microarray experiments. The annotations are generated by searching literature databases (Medline, GeneRIF) for the gene's synonyms co-occurrences with user-provided terms.
	The Ribosome Builder Project - http://rbuilder.sourceforge.net A software project to simulate the ribosome.

	Dynabyte BioLabs - http://biolabs.dynabyte.se Off the shelf software and software development for analysis of gene expression data and genetic networks.
	http://134.34.193.29/aio/ - http://134.34.193.29/aio/ Downloadable package integrating database, oligo ordering, DNA and protein analysis programs from Konstanz, Germany.
	Gentellect - http://www.gentellect.com The "Gene Expression Analysis System" searches several gene expression databases and shows the results in several graphic formats.
	BioMath Solutions, LLC - http://www.biomathsolutions.com A consulting company specializing in data analysis of high throughput molecular technologies, experimental design, biomarker prediction, and software and product development.
	Gene Kinetics - http://www.scienceandresearchdevelopmentinstitute.com/genkia.html Software for transcription and cell cycle genes, providing peak intervals, max values as a function of decay of gene-activating principle, inhibitory mRNA, gene amplification, anabolic capacity and proteolysis.

List of Lists Annotated - http://lola.gwu.edu/
LOLA is a platform for uploading and comparing microarray generated gene lists, with curated, annotated and published data linked to citations, in an interface maintained by the Genomics Core Facility, George Washington University.

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