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CMD Bioscience - http://www.cmdbioscience.com
Specialists in the use of computational methods to model and engineer protein-protein interactions. The "Affinity" algorithm is designed to predict protein-protein binding affinities and is free for academic users. |
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HOPPscore - http://hoppscore.lbl.gov
Application for evaluating the structural quality of theoretical or experimental protein structures. Proteins are evaluated by comparing short fragments of structure to a reference dictionary of fragments from high resolution structures. |
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Calculation of Protein Isoelectric Point - http://isoelectric.ovh.org
Tool for the online estimation of protein isoelectric points, or download a free program to calculate pI. |
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Global Range Molecular Matching - http://vakser.bioinformatics.ku.edu//resources/gramm/
GRAMM, a program for modeling docking for enzymology and receptor interactions of hormones and drugs. Includes web server and free download options maintained at the University of Kansas, Lawrence. |
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bioYALP: For Biologists, Yet Another Lipoprotein Predictor - http://destroyedv3.free.fr/yalp/
Bioinformatics tool for lipoprotein prediction which is able to analyse protein sequences or a proteome and list possible lipoproteins. It has been tested on bacteria. |