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LIPED - http://www.genemapping.cn/liped.html
Fortran program by Jurg Ott to carry out genetic linkage analysis -- estimate the recombination fraction, by calculating pedigree likelihoods for various assumed values of the recombination fraction. Only two loci can be handled at a time, for example, a disease locus and a marker locus. |
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Naccess - http://www.bioinf.manchester.ac.uk/naccess/
Fortran program to calculate the accessible area of a molecule from a PDB (Protein Data Bank) format file. It can calculate the atomic and residue accessiblities for both proteins and nucleic acids. Free for academics. |
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Genometric Analysis Simulation Program (GASP) - http://research.nhgri.nih.gov/gasp/
Program to generate samples of family data based on user specified genetic models. |
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Haplo - http://watson.hgen.pitt.edu/register/docs/haplo.html
Fortran 77 code by Daniel E. Weeks and Kenneth Lange for haplotyping with computation of conditional probabilities. |